Ciro Santilli
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中国独裁统治 China Dictatorship 新疆改造中心、六四事件、法轮功、郝海东、709大抓捕、2015巴拿马文件 邓家贵、低端人口、西藏骚乱
Taxonomy
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Science
Natural science
Biology
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words: 9k
articles: 279
Table of contents
9k
279
Autothrophs and heterothrophs
Taxonomy
15
6
Autothroph
Autothrophs and heterothrophs
15
4
Chemosynthesis
Autothroph
2
Hydrogen sulfide chemosynthesis
Chemosynthesis
Hydrogen chemosynthesis
Chemosynthesis
Photosynthesis
Autothroph
15
Heterotroph
Autothrophs and heterothrophs
Phylogenetics
Taxonomy
209
15
Last universal common ancestor
Phylogenetics
Phylogenetic tree (Tree of life)
Phylogenetics
101
3
Cladogram
Phylogenetic tree
39
Coral of life
Phylogenetic tree
16
OneZoom
Phylogenetic tree
8
Mono and paraphyly
Phylogenetics
22
5
Clade
Mono and paraphyly
5
1
Monophyly
Clade
5
Paraphyly
Mono and paraphyly
17
2
Paraphyletic subgroup
Paraphyly
Non-clade groups are evil
Paraphyly
17
Basal (phylogenetics)
Phylogenetics
29
Crown group
Phylogenetics
7
Polyphyly
Phylogenetics
50
1
Parallel evolution
Polyphyly
31
Taxonomy database
Taxonomy
3
Taxonomic rank
Taxonomy
80
5
Genus
Taxonomic rank
Domain (biology)
Taxonomic rank
Kingdom (biology)
Taxonomic rank
14
Phylum
Taxonomic rank
5
Class (biology)
Taxonomic rank
Aerobic and anaerobic organisms
Taxonomy
17
2
Aerobic organism
Aerobic and anaerobic organisms
17
Anaerobic organism
Aerobic and anaerobic organisms
Unicellular and multicellular organisms
Taxonomy
274
15
Unicellular organism
Unicellular and multicellular organisms
Multicellular organism
Unicellular and multicellular organisms
274
13
Developmental biology
Multicellular organism
77
5
Developmental genetics
Developmental biology
37
4
Developmental neurobiology
Developmental genetics
18
Homeobox gene
Developmental genetics
1
Hox gene
Homeobox gene
Regeneration (biology)
Developmental genetics
5
Chimera (genetics)
Multicellular organism
Germline and somatic cells
Multicellular organism
61
2
Germline
Germline and somatic cells
61
Somatic cell
Germline and somatic cells
The simplest multicellular species
Multicellular organism
78
Colony (biology)
Multicellular organism
24
Multicellularity is polyphyletic
Multicellular organism
34
Microorganism
Taxonomy
Prokaryote
Taxonomy
33
Species
Taxonomy
8k
227
Virus
Species
446
33
Virus classification
Virus
11
3
Bacteriophage
Virus classification
Baltimore classification
Virus classification
11
1
Positive-strand RNA virus (+ssRNA)
Baltimore classification
11
Coronavirus
Virus
372
21
Coronavirus Replication Cycle
Coronavirus
8
COVID-19
Coronavirus
349
19
Why it takes several days to enter inflammatory phase in COVID-19?
COVID-19
102
Why is COVID-19 so serious in some people but not in others?
COVID-19
37
Why is COVID-19 more serious than the flu?
COVID-19
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
COVID-19
155
15
Variants of SARS-CoV-2
Severe acute respiratory syndrome coronavirus 2
SARS-CoV-2 cell entry
Severe acute respiratory syndrome coronavirus 2
24
SARS-CoV-2 gene
Severe acute respiratory syndrome coronavirus 2
27
1
ORF1ab
SARS-CoV-2 gene
7
SARS-CoV-2 protein
Severe acute respiratory syndrome coronavirus 2
83
10
SARS-CoV-2 structural protein
SARS-CoV-2 protein
37
4
SARS-CoV-2 E protein (envelope)
SARS-CoV-2 structural protein
6
SARS-CoV-2 M protein (membrane)
SARS-CoV-2 structural protein
6
SARS-CoV-2 S protein (spike)
SARS-CoV-2 structural protein
25
SARS-CoV-2 N protein
SARS-CoV-2 structural protein
SARS-CoV-2 non-structural protein
SARS-CoV-2 protein
29
3
SARS-CoV-2 Nsp3
SARS-CoV-2 non-structural protein
2
SARS-CoV-2 Nsp5
SARS-CoV-2 non-structural protein
12
SARS-CoV-2 Nsp12
SARS-CoV-2 non-structural protein
7
SARS-CoV-2 accessory protein
SARS-CoV-2 protein
17
Dengue virus
Virus
Retrovirus
Virus
63
5
Integrase
Retrovirus
Reverse transcriptase
Retrovirus
18
HIV
Retrovirus
2
AIDS
HIV
HIV vaccine
HIV
Bacteria
Species
6k
66
Bacterial cellular morphogology
Bacteria
Bacterial cell structure
Bacteria
9
1
Bacterial cell wall
Bacterial cell structure
9
Bacterial conjugation (bacterial sex)
Bacteria
2
1
Origin of transfer
Bacterial conjugation
Bacterial genome
Bacteria
1
Bacterial chromosome is circular
Bacterial genome
Gram stain
Bacteria
18
4
Gram-positive bacteria
Gram stain
Gram-negative bacteria
Gram stain
18
2
Bacterial outer membrane
Gram-negative bacteria
13
1
Periplasm
Bacterial outer membrane
6
List of bacteria
Bacteria
6k
53
Escherichia coli (E. Coli)
List of bacteria
5k
40
E. Coli replication time
Escherichia coli
52
E. Coli starts DNA replication before the previous one finished
Escherichia coli
1
E. Coli origin of replication
Escherichia coli
105
1
E. Coli genome starting point
E. Coli origin of replication
87
E. Coli whole cell simulation
Escherichia coli
4k
13
E. Coli Whole Cell Model by Covert Lab (CovertLab/WholeCellEcoliRelease)
E. Coli whole cell simulation
2k
11
1. Install and first run
E. Coli Whole Cell Model by Covert Lab
2. Output overview
E. Coli Whole Cell Model by Covert Lab
1
2.1. Mass fracion summary plot analysis
Output overview
3. Run variants
E. Coli Whole Cell Model by Covert Lab
2
3.1. Default run variant
Run variants
3.2. Time series run variant
Run variants
4. Other run variants
E. Coli Whole Cell Model by Covert Lab
5. Source code overview
E. Coli Whole Cell Model by Covert Lab
1
5.1. Condition
Source code overview
6. Model validation
E. Coli Whole Cell Model by Covert Lab
7. Publications
E. Coli Whole Cell Model by Covert Lab
Multi-Omics Model and Analytics (MOMA, 2016)
E. Coli whole cell simulation
18
E. Coli Metabolome Database
Escherichia coli
E. Coli strain
Escherichia coli
1k
20
E. Coli K-12
E. Coli strain
1k
19
E. Coli K-12 MG1655
E. Coli K-12
1k
18
E. Coli K-12 MG1655 origin of replication (3,925,744 - 3,925,975)
E. Coli K-12 MG1655
14
E. Coli K-12 MG1655 gene
E. Coli K-12 MG1655
753
10
E. Coli K-12 MG1655 gene thrL (190-255, thr operon leader peptide)
E. Coli K-12 MG1655 gene
150
E. Coli K-12 MG1655 gene thrA (337-2799, fused aspartate kinase/homoserine dehydrogenase 1)
E. Coli K-12 MG1655 gene
546
E. Coli K-12 MG1655 gene thrB (2,801 - 3,733)
E. Coli K-12 MG1655 gene
6
E. Coli K-12 MG1655 gene thrC
E. Coli K-12 MG1655 gene
3
E. Coli K-12 MG1655 gene yaaX (5,234 - 5,530)
E. Coli K-12 MG1655 gene
9
E. Coli K-12 MG1655 gene dksA (160,604 - 160,149)
E. Coli K-12 MG1655 gene
E. Coli K-12 MG1655 gene lrp (932,595 - 933,089)
E. Coli K-12 MG1655 gene
E. Coli K-12 MG1655 gene fnr (1,398,774 - 1,399,526)
E. Coli K-12 MG1655 gene
7
E. Coli K-12 MG1655 gene arcA (4,639,590 - 4,640,306)
E. Coli K-12 MG1655 gene
25
E. Coli K-12 MG1655 gene ytdX (5,234 - 5,530)
E. Coli K-12 MG1655 gene
7
E. Coli K-12 MG1655 gene of unknown function
E. Coli K-12 MG1655
65
E. Coli K-12 MG1655 promoter
E. Coli K-12 MG1655
195
4
E. Coli K-12 MG1655 promoter thrLp (148)
E. Coli K-12 MG1655 promoter
133
3
E. Coli K-12 MG1655 operon thrLABC
E. Coli K-12 MG1655 promoter thrLp
114
E. Coli K-12 MG1655 transcription unit thrL
E. Coli K-12 MG1655 promoter thrLp
9
E. Coli K-12 MG1655 transcription unit thrLABC
E. Coli K-12 MG1655 promoter thrLp
7
Mycoplasma
List of bacteria
641
11
Mycoplasma genitalium (M. genitalium)
Mycoplasma
427
3
M. genitalium whole cell simulation
Mycoplasma genitalium
111
2
Lattice Microbes (2022)
M. genitalium whole cell simulation
85
M. genitalium whole cell model by Covert lab
M. genitalium whole cell simulation
26
Mycoplasma mycoides
Mycoplasma
195
6
M. mycoides strain
Mycoplasma mycoides
195
5
M. mycoides JCVI strain
M. mycoides strain
195
4
JCVI-syn3A (2019)
M. mycoides JCVI strain
85
1
Essential metabolism for a minimal cell (2019)
JCVI-syn3A
JCVI-syn3.0 (2016)
M. mycoides JCVI strain
15
JCVI-syn3B (2022)
M. mycoides JCVI strain
74
Arkarya
Species
82
2
Archaea
Arkarya
59
1
Archaea are more cosely related to the eukaryotes than bacteria
Archaea
59
Eukaryote
Species
1k
117
Advantage of eukaryote over bacteria
Eukaryote
53
1
Eukaryotes can do phatocytosis due to their cytoskeleton
Advantage of eukaryote over bacteria
53
Amoeba
Eukaryote
42
Eukarya subclade
Eukaryote
1k
113
Animal
Eukarya subclade
1k
105
Animal anatomy
Animal
11
2
Anus
Animal anatomy
Cloaca
Animal anatomy
11
Animal flight
Animal
Warm-blooded
Animal
22
1
Homeothermy
Warm-blooded
22
Animal subclade
Animal
965
98
Placozoan
Animal subclade
25
Arthropod
Animal subclade
10
3
Drosophila melanogaster (Common fruit fly, Fruit fly)
Arthropod
10
2
Fruit fly model
Drosophila melanogaster
10
1
NeuroMechFly (2021)
Fruit fly model
10
Chordate
Animal subclade
853
84
Chordate subclade
Chordate
802
83
Lancet
Chordate subclade
Vertebrate
Chordate subclade
802
81
Vertebrate subclade
Vertebrate
Fish
Vertebrate
723
79
Mudfish
Fish
Zebrafish (Danio rerio)
Fish
Fish subclade
Fish
676
76
Tetrapod
Fish subclade
654
75
Tetrapod subclade
Tetrapod
597
74
Amphibian
Tetrapod subclade
Amniote
Tetrapod subclade
597
72
Amnion
Amniote
Amniote subclade
Amniote
548
70
Sauropsida
Amniote subclade
22
4
Reptile
Sauropsida
22
Sauropsida subclade
Sauropsida
2
Bird
Sauropsida subclade
1
Crow
Bird
Synapsid (Mammals + extinct reptile like cousins)
Amniote subclade
526
64
Synapsid subclade
Synapsid
500
63
Mammal
Synapsid subclade
500
62
Milk
Mammal
Mammal subclade
Mammal
498
60
Monotreme (Mammals that lay eggs)
Mammal subclade
64
Theria (Mammals that don't lay eggs, wild beast)
Mammal subclade
434
58
Theria subclade
Theria
407
57
Marsupial
Theria subclade
28
Placentalia
Theria subclade
379
55
Placenta
Placentalia
Placentalia subclade
Placentalia
379
53
Bat
Placentalia subclade
29
Mouse
Placentalia subclade
48
5
Rat
Mouse
23
House mouse (Mus musculus)
Mouse
25
3
Mouse mutant
House mouse
25
2
Genetically modified mouse
Mouse mutant
Knockout mouse
Mouse mutant
8
Primate
Placentalia subclade
302
42
Primate subclade
Primate
302
41
Simian
Primate subclade
302
40
Simian subclade
Simian
302
39
Ape (Hominoidea)
Simian subclade
302
38
Ape subclade
Ape
302
37
Australopithecine (7.3 Mya)
Ape subclade
302
36
Human
Australopithecine
253
35
Human evolution
Human
4
Early expansions of hominins out of Africa (2.1 Mya - 200 kya)
Human evolution
Early human migrations (200 kya)
Human evolution
Interbreeding between archaic and modern humans
Human evolution
Human loss of fur
Human evolution
Human body
Human
202
27
Human cell type
Human body
11
4
Human Cell Atlas
Human cell type
Human immortalised cell line
Human cell type
2
HeLa (1951)
Human immortalised cell line
HEK 293 cell (1973)
Human immortalised cell line
Human molecular biology
Human body
182
20
Human proteome
Human molecular biology
Human genome
Human molecular biology
126
18
Human chromosome
Human genome
Human genetic variation
Human genome
3
Personal Genome Project
Human genetic variation
Human Phenotype Ontology
Human genetic variation
ABO blood group system
Human genetic variation
Human mtDNA
Human genome
3
Human mitochondrial molecular clock
Human mtDNA
Cambridge Reference Sequence (1981, first human mtDNA full sequencing)
Human mtDNA
1
Sequence and organization of the human mitochondrial genome by Sanger et al. (1981)
Cambridge Reference Sequence
Human mitochondrial DNA haplogroup
Human genome
Human genome sequencing project
Human genome
4
Human Genome Project (2003, first largs scale sequencing of a human genome)
Human genome sequencing project
2015 Iceland genome sequencing studies
Human genome sequencing project
100,000 Genomes Project (2018, UK)
Human genome sequencing project
TwinsUK (1992-, UK, 13k)
Human genome sequencing project
Human protein
Human genome
2
Angiotensin-converting enzyme 2
Human protein
TMPRSS2
Human protein
Human body system
Human body
Transhumanism
Human
1
Brain in a vat
Transhumanism
Ungulate (Cows, pigs, whales)
Placentalia subclade
2
Ungulate subclade
Ungulate
1
Cow
Ungulate subclade
Nematode
Animal subclade
74
7
Caenorhabditis elegans (C. elegans)
Nematode
74
6
C. elegans cell lineage
Caenorhabditis elegans
25
C. elegans body system
Caenorhabditis elegans
C. elegans models and databases
Caenorhabditis elegans
7
2
WormAtlas
C. elegans models and databases
WormWideWeb (2023)
C. elegans models and databases
7
OpenWorm
Caenorhabditis elegans
17
Fungus
Eukarya subclade
50
3
Mold
Fungus
Yeast
Fungus
23
Saccharomyces cerevisiae (S. cerevisiae)
Fungus
22
Plant
Eukarya subclade
327
2
Borlotti beans
Plant
249
Pinto bean
Plant
73
Extraterrestrial life (alien)
Species
4
Kardashev scale
Extraterrestrial life
Search for extraterrestrial intelligence (SETI)
Extraterrestrial life
2
Communication with extraterrestrial intelligence (CETI)
Search for extraterrestrial intelligence
1
Arecibo message
Communication with extraterrestrial intelligence
Ancestors
Biology
Natural science
Science
Ciro Santilli's Homepage
Synonyms
Taxonomy