Ciro Santilli
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Species
wiki
Taxonomy
toc
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Table of contents
8k
Virus
link
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Species
0
Virus classification
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Virus
0
Bacteriophage
link
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Virus classification
0
Baltimore classification
link
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Virus classification
0
Positive-strand RNA virus (+ssRNA)
link
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Baltimore classification
11
Coronavirus
link
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Virus
15
Coronavirus Replication Cycle
link
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Coronavirus
8
COVID-19
link
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Coronavirus
55
Why it takes several days to enter inflammatory phase in COVID-19?
link
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COVID-19
102
Why is COVID-19 so serious in some people but not in others?
link
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COVID-19
37
Why is COVID-19 more serious than the flu?
link
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COVID-19
0
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
link
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COVID-19
21
Variants of SARS-CoV-2
link
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Severe acute respiratory syndrome coronavirus 2
0
SARS-CoV-2 cell entry
link
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Severe acute respiratory syndrome coronavirus 2
24
SARS-CoV-2 gene
link
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Severe acute respiratory syndrome coronavirus 2
20
ORF1ab
link
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SARS-CoV-2 gene
7
SARS-CoV-2 protein
link
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Severe acute respiratory syndrome coronavirus 2
0
SARS-CoV-2 structural protein
link
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SARS-CoV-2 protein
0
SARS-CoV-2 E protein (envelope)
link
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SARS-CoV-2 structural protein
6
SARS-CoV-2 M protein (membrane)
link
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SARS-CoV-2 structural protein
6
SARS-CoV-2 S protein (spike)
link
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SARS-CoV-2 structural protein
25
SARS-CoV-2 N protein
link
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SARS-CoV-2 structural protein
0
SARS-CoV-2 non-structural protein
link
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SARS-CoV-2 protein
8
SARS-CoV-2 Nsp3
link
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SARS-CoV-2 non-structural protein
2
SARS-CoV-2 Nsp5
link
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SARS-CoV-2 non-structural protein
12
SARS-CoV-2 Nsp12
link
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SARS-CoV-2 non-structural protein
7
SARS-CoV-2 accessory protein
link
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SARS-CoV-2 protein
17
Dengue virus
link
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Virus
0
Retrovirus
link
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Virus
45
Integrase
link
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Retrovirus
0
Reverse transcriptase
link
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Retrovirus
18
HIV
link
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Retrovirus
0
AIDS
link
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HIV
0
HIV vaccine
link
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HIV
0
Bacteria
link
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Species
2
Bacterial cellular morphogology
link
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Bacteria
0
Bacterial cell structure
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Bacteria
0
Bacterial cell wall
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Bacterial cell structure
9
Bacterial conjugation (bacterial sex)
link
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Bacteria
2
Origin of transfer
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Bacterial conjugation
0
Bacterial genome
link
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Bacteria
0
Bacterial chromosome is circular
link
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Bacterial genome
0
Gram stain
link
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Bacteria
0
Gram-positive bacteria
link
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Gram stain
0
Gram-negative bacteria
link
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Gram stain
5
Bacterial outer membrane
link
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Gram-negative bacteria
7
Periplasm
link
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Bacterial outer membrane
6
List of bacteria
link
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Bacteria
0
Escherichia coli (E. Coli)
link
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List of bacteria
74
E. Coli replication time
link
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Escherichia coli
52
E. Coli starts DNA replication before the previous one finished
link
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Escherichia coli
1
E. Coli origin of replication
link
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Escherichia coli
18
E. Coli genome starting point
link
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E. Coli origin of replication
87
E. Coli whole cell simulation
link
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Escherichia coli
0
E. Coli Whole Cell Model by Covert Lab (CovertLab/WholeCellEcoliRelease)
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E. Coli whole cell simulation
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1. Install and first run
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E. Coli Whole Cell Model by Covert Lab
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2. Output overview
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E. Coli Whole Cell Model by Covert Lab
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2.1. Mass fracion summary plot analysis
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Output overview
0
3. Run variants
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E. Coli Whole Cell Model by Covert Lab
0
3.1. Default run variant
link
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Run variants
0
3.2. Time series run variant
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Run variants
0
4. Other run variants
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E. Coli Whole Cell Model by Covert Lab
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5. Source code overview
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E. Coli Whole Cell Model by Covert Lab
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5.1. Condition
link
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Source code overview
0
6. Model validation
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E. Coli Whole Cell Model by Covert Lab
0
7. Publications
link
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E. Coli Whole Cell Model by Covert Lab
0
Multi-Omics Model and Analytics (MOMA, 2016)
link
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E. Coli whole cell simulation
18
E. Coli Metabolome Database
link
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Escherichia coli
0
E. Coli strain
link
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Escherichia coli
3
E. Coli K-12
link
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E. Coli strain
0
E. Coli K-12 MG1655
link
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E. Coli K-12
152
E. Coli K-12 MG1655 origin of replication (3,925,744 - 3,925,975)
link
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E. Coli K-12 MG1655
14
E. Coli K-12 MG1655 gene
link
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E. Coli K-12 MG1655
0
E. Coli K-12 MG1655 gene thrL (190-255, thr operon leader peptide)
link
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E. Coli K-12 MG1655 gene
150
E. Coli K-12 MG1655 gene thrA (337-2799, fused aspartate kinase/homoserine dehydrogenase 1)
link
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E. Coli K-12 MG1655 gene
546
E. Coli K-12 MG1655 gene thrB (2,801 - 3,733)
link
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E. Coli K-12 MG1655 gene
6
E. Coli K-12 MG1655 gene thrC
link
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E. Coli K-12 MG1655 gene
3
E. Coli K-12 MG1655 gene yaaX (5,234 - 5,530)
link
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E. Coli K-12 MG1655 gene
9
E. Coli K-12 MG1655 gene dksA (160,604 - 160,149)
link
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E. Coli K-12 MG1655 gene
0
E. Coli K-12 MG1655 gene lrp (932,595 - 933,089)
link
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E. Coli K-12 MG1655 gene
0
E. Coli K-12 MG1655 gene fnr (1,398,774 - 1,399,526)
link
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E. Coli K-12 MG1655 gene
7
E. Coli K-12 MG1655 gene arcA (4,639,590 - 4,640,306)
link
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E. Coli K-12 MG1655 gene
25
E. Coli K-12 MG1655 gene ytdX (5,234 - 5,530)
link
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E. Coli K-12 MG1655 gene
7
E. Coli K-12 MG1655 gene of unknown function
link
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E. Coli K-12 MG1655
65
E. Coli K-12 MG1655 promoter
link
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E. Coli K-12 MG1655
62
E. Coli K-12 MG1655 promoter thrLp (148)
link
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E. Coli K-12 MG1655 promoter
3
E. Coli K-12 MG1655 operon thrLABC
link
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E. Coli K-12 MG1655 promoter thrLp
114
E. Coli K-12 MG1655 transcription unit thrL
link
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E. Coli K-12 MG1655 promoter thrLp
9
E. Coli K-12 MG1655 transcription unit thrLABC
link
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E. Coli K-12 MG1655 promoter thrLp
7
Mycoplasma
link
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List of bacteria
19
Mycoplasma genitalium (M. genitalium)
link
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Mycoplasma
316
M. genitalium whole cell simulation
link
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Mycoplasma genitalium
0
Lattice Microbes (2022)
link
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M. genitalium whole cell simulation
85
M. genitalium whole cell model by Covert lab
link
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M. genitalium whole cell simulation
26
Mycoplasma mycoides
link
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Mycoplasma
0
M. mycoides strain
link
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Mycoplasma mycoides
0
M. mycoides JCVI strain
link
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M. mycoides strain
21
JCVI-syn3A (2019)
link
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M. mycoides JCVI strain
85
Essential metabolism for a minimal cell (2019)
link
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JCVI-syn3A
0
JCVI-syn3.0 (2016)
link
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M. mycoides JCVI strain
15
Arkarya
link
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Species
23
Archaea
link
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Arkarya
0
Archaea are more cosely related to the eukaryotes than bacteria
link
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Archaea
59
Eukaryote
link
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Species
2
Advantage of eukaryote over bacteria
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Eukaryote
0
Eukaryotes can do phatocytosis due to their cytoskeleton
link
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Advantage of eukaryote over bacteria
53
Amoeba
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Eukaryote
42
Eukarya subclade
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Eukaryote
0
Animal
link
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Eukarya subclade
8
Animal anatomy
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Animal
0
Anus
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Animal anatomy
0
Cloaca
link
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Animal anatomy
11
Animal flight
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Animal
0
Warm-blooded
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Animal
0
Homeothermy
link
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Warm-blooded
22
Animal subclade
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Animal
3
Placozoan
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Animal subclade
25
Arthropod
link
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Animal subclade
0
Drosophila melanogaster (Common fruit fly, Fruit fly)
link
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Arthropod
0
Fruit fly model
link
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Drosophila melanogaster
0
NeuroMechFly (2021)
link
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Fruit fly model
10
Chordate
link
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Animal subclade
51
Chordate subclade
link
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Animal subclade
0
Lancet
link
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Chordate subclade
0
Vertebrate
link
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Chordate subclade
79
Fish
link
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Vertebrate
47
Mudfish
link
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Fish
0
Zebrafish (Danio rerio)
link
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Fish
0
Vertebrate subclade
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Vertebrate
0
Tetrapod
link
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Vertebrate subclade
57
Tetrapod subclade
link
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Tetrapod
0
Amphibian
link
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Tetrapod subclade
0
Amniote
link
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Tetrapod subclade
49
Amnion
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Amniote
0
Amniote subclade
link
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Amniote
0
Sauropsida
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Amniote subclade
0
Reptile
link
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Sauropsida
22
Sauropsida subclade
link
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Sauropsida
0
Bird
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Sauropsida subclade
0
Synapsid
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Amniote subclade
26
Synapsid subclade
link
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Synapsid
0
Mammal
link
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Synapsid subclade
2
Milk
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Mammal
0
Mammal subclade
link
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Mammal
0
Monotreme
link
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Mammal subclade
64
Theria
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Mammal subclade
27
Theria subclade
link
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Theria
0
Marsupial
link
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Theria subclade
28
Placentalia
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Theria subclade
0
Placenta
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Placentalia
0
Placentalia subclade
link
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Placentalia
0
Bat
link
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Placentalia subclade
29
Mouse
link
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Placentalia subclade
0
Rat
link
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Mouse
23
House mouse (Mus musculus)
link
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Mouse
0
Mouse mutant
link
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House mouse
17
Genetically modified mouse
link
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Mouse mutant
0
Knockout mouse
link
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Mouse mutant
8
Human
link
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Placentalia subclade
0
Human body
link
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Human
0
Human cell type
link
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Human body
0
Human Cell Atlas
link
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Human cell type
0
Human immortalised cell line
link
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Human cell type
0
HeLa (1951)
link
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Human immortalised cell line
0
HEK 293 cell (1973)
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Human immortalised cell line
0
Human molecular biology
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Human body
0
Human proteome
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Human molecular biology
0
Human genome
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Human molecular biology
0
Human chromosome
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Human genome
0
Human genetic variation
link
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Human genome
0
Personal Genome Project
link
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Human genetic variation
0
Human Phenotype Ontology
link
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Human genetic variation
0
ABO blood group system
link
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Human genetic variation
0
Human mtDNA
link
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Human genome
0
Human mitochondrial molecular clock
link
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Human mtDNA
0
Cambridge Reference Sequence (1981, first human mtDNA full sequencing)
link
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Human mtDNA
0
Sequence and organization of the human mitochondrial genome by Sanger et al. (1981)
link
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Cambridge Reference Sequence
0
Human mitochondrial DNA haplogroup
link
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Human genome
0
Human genome sequencing project
link
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Human genome
0
Human Genome Project (2003, first largs scale sequencing of a human genome)
link
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Human genome sequencing project
0
2015 Iceland genome sequencing studies
link
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Human genome sequencing project
0
100,000 Genomes Project (2018, UK)
link
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Human genome sequencing project
0
TwinsUK (1992-, UK, 13k)
link
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Human genome sequencing project
0
Human protein
link
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Human genome
0
Angiotensin-converting enzyme 2
link
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Human protein
0
TMPRSS2
link
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Human protein
0
Human body system
link
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Human body
0
Transhumanism
link
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Human
0
Brain in a vat
link
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Transhumanism
0
Nematode
link
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Animal subclade
0
Caenorhabditis elegans (C. elegans)
link
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Nematode
25
C. elegans cell lineage
link
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Caenorhabditis elegans
25
C. elegans models and databases
link
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Caenorhabditis elegans
0
WormAtlas
link
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C. elegans models and databases
0
OpenWorm
link
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Caenorhabditis elegans
17
Fungus
link
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Eukarya subclade
5
Mold
link
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Fungus
0
Yeast
link
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Fungus
23
Saccharomyces cerevisiae (S. cerevisiae)
link
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Fungus
22
Plant
link
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Eukarya subclade
5
Borlotti beans
link
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Plant
249
Pinto bean
link
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Plant
73
Extraterrestrial life (alien)
link
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Species
0
Search for extraterrestrial intelligence (SETI)
link
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Extraterrestrial life
0
Communication with extraterrestrial intelligence (CETI)
link
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Search for extraterrestrial intelligence
0
Arecibo message
link
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Communication with extraterrestrial intelligence
0
Ancestors
Taxonomy
Biology
Natural science
Science
Ciro Santilli's Homepage
Incoming links
Cell type
Chromosome
Omics
Proteome
Sequence alignment