Ciro Santilli
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List of bacteria
...
Science
Natural science
Biology
Taxonomy
Species
Bacteria
OurBigBook.com
words: 6k
articles: 53
Table of contents
6k
53
Escherichia coli
(E. Coli)
List of bacteria
5k
40
E. Coli replication time
Escherichia coli
52
E. Coli starts DNA replication before the previous one finished
Escherichia coli
1
E. Coli origin of replication
Escherichia coli
105
1
E. Coli genome starting point
E. Coli origin of replication
87
E. Coli whole cell simulation
Escherichia coli
4k
13
E. Coli Whole Cell Model by Covert Lab
(CovertLab/WholeCellEcoliRelease)
E. Coli whole cell simulation
2k
11
1.
Install and first run
E. Coli Whole Cell Model by Covert Lab
2.
Output overview
E. Coli Whole Cell Model by Covert Lab
1
2.1.
Mass fracion summary plot analysis
Output overview
3.
Run variants
E. Coli Whole Cell Model by Covert Lab
2
3.1.
Default run variant
Run variants
3.2.
Time series run variant
Run variants
4.
Other run variants
E. Coli Whole Cell Model by Covert Lab
5.
Source code overview
E. Coli Whole Cell Model by Covert Lab
1
5.1.
Condition
Source code overview
6.
Model validation
E. Coli Whole Cell Model by Covert Lab
7.
Publications
E. Coli Whole Cell Model by Covert Lab
Multi-Omics Model and Analytics
(MOMA, 2016)
E. Coli whole cell simulation
18
E. Coli Metabolome Database
Escherichia coli
E. Coli strain
Escherichia coli
1k
20
E. Coli K-12
E. Coli strain
1k
19
E. Coli K-12 MG1655
E. Coli K-12
1k
18
E. Coli K-12 MG1655 origin of replication
(3,925,744 - 3,925,975)
E. Coli K-12 MG1655
14
E. Coli K-12 MG1655 gene
E. Coli K-12 MG1655
753
10
E. Coli K-12 MG1655 gene thrL
(190-255, thr operon leader peptide)
E. Coli K-12 MG1655 gene
150
E. Coli K-12 MG1655 gene thrA
(337-2799, fused aspartate kinase/homoserine dehydrogenase 1)
E. Coli K-12 MG1655 gene
546
E. Coli K-12 MG1655 gene thrB
(2,801 - 3,733)
E. Coli K-12 MG1655 gene
6
E. Coli K-12 MG1655 gene thrC
E. Coli K-12 MG1655 gene
3
E. Coli K-12 MG1655 gene yaaX
(5,234 - 5,530)
E. Coli K-12 MG1655 gene
9
E. Coli K-12 MG1655 gene dksA
(160,604 - 160,149)
E. Coli K-12 MG1655 gene
E. Coli K-12 MG1655 gene lrp
(932,595 - 933,089)
E. Coli K-12 MG1655 gene
E. Coli K-12 MG1655 gene fnr
(1,398,774 - 1,399,526)
E. Coli K-12 MG1655 gene
7
E. Coli K-12 MG1655 gene arcA
(4,639,590 - 4,640,306)
E. Coli K-12 MG1655 gene
25
E. Coli K-12 MG1655 gene ytdX
(5,234 - 5,530)
E. Coli K-12 MG1655 gene
7
E. Coli K-12 MG1655 gene of unknown function
E. Coli K-12 MG1655
65
E. Coli K-12 MG1655 promoter
E. Coli K-12 MG1655
195
4
E. Coli K-12 MG1655 promoter thrLp
(148)
E. Coli K-12 MG1655 promoter
133
3
E. Coli K-12 MG1655 operon thrLABC
E. Coli K-12 MG1655 promoter thrLp
114
E. Coli K-12 MG1655 transcription unit thrL
E. Coli K-12 MG1655 promoter thrLp
9
E. Coli K-12 MG1655 transcription unit thrLABC
E. Coli K-12 MG1655 promoter thrLp
7
Mycoplasma
List of bacteria
639
11
Mycoplasma genitalium
(M. genitalium)
Mycoplasma
427
3
M. genitalium whole cell simulation
Mycoplasma genitalium
111
2
Lattice Microbes
(2022)
M. genitalium whole cell simulation
85
M. genitalium whole cell model by Covert lab
M. genitalium whole cell simulation
26
Mycoplasma mycoides
Mycoplasma
195
6
M. mycoides strain
Mycoplasma mycoides
195
5
M. mycoides JCVI strain
M. mycoides strain
195
4
JCVI-syn3A
(2019)
M. mycoides JCVI strain
85
1
Essential metabolism for a minimal cell (2019)
JCVI-syn3A
JCVI-syn3.0
(2016)
M. mycoides JCVI strain
15
JCVI-syn3B
(2022)
M. mycoides JCVI strain
74
Ancestors
(7)
Bacteria
Species
Taxonomy
Biology
Natural science
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